Difference: FJPPLApplications (1 vs. 5)

Revision 52016-08-01 - Main.SebastienIncerti

Line: 1 to 1
 
META TOPICPARENT name="FJPPLprojects"
APP_01 : The Geant4-DNA project at the Physics-Biology frontier

Summary :

Changed:
<
<		The Bio2 projects encompasses modeling and experimental interdisciplinary activities. Both Japan and French teams are involved in the Geant4-DNA project aiming at extending the Geant4 Monte Carlo toolkit for the modeling of early biological effects of ionising radiation at the DNA scale. In 2014, the physics models of Geant4-DNA have all been deployed to GPGPU allowing to reach impressive performance (> 200 speed gain). Two papers have been submitted for publication. In 2015, the porting of new physics models for the simulation of electrons in liquid water is on-going. In the near future, we expect to start the porting of Geant4-DNA physicochemical and chemical processes to GPGPU.
>
>		The Bio2 projects encompasses modeling and experimental interdisciplinary activities. Both Japan and French teams are involved in the Geant4-DNA project aiming at extending the Geant4 Monte Carlo toolkit for the modeling of early biological effects of ionising radiation at the DNA scale. In 2014, the physics models of Geant4-DNA have all been deployed to GPGPU allowing to reach impressive performance (> 200 speed gain). This porting allowed in particular a deep testing of Geant4-DNA physics models. In 2015 and 2016, the porting of new Geant4-DNA physics models as well as physico-chemistry and chemistry processes has been achieved for the first time reaching again impressive computing performance; this will significantly boost the development of Geant4-DNA based applications at the physics-biology frontier.
  French members :
Changed:
<
<		S. Incerti
>
>		S. Incerti, D. Sakata
  Japanese members :
T. Sasaki, K. Amako, Y. Hirano, A. Kimura, K. Murakami, S. Okado, C. Omachi, T. Toshito

References :

Changed:
<
<		[1] THE GEANT4-DNA PROJECT, S. Incerti et al., Int. J. Model. Simul. Sci. Comput. 1 (2010) 157
[2] ACCELERATION OF GEANT4-DNA PHYSICS MODELS
PERFORMANCE USING GRAPHICS PROCESSING UNIT, S. Okada et al., Joint International Conference on Supercomputing in Nuclear Applications + Monte Carlo (SNA+MC2015), Nashville, TN, USA, April 19-23, 2015, submitted
[3] GPU ACCELERATION OF MONTE CARLO SIMULATION AT THE CELLULAR AND DNA LEVELS, S. Okada et al., InMed2015 (Innovation in Medicine and Healthcare 2015), Kyoto, Japan,September 11-12, 2015, submitted
>
>		[1] The Geant4-DNA project, S. Incerti, G. Baldacchino, M. Bernal, R. Capra, C. Champion, Z. Francis, S. Guatelli, P. Gučye, A. Mantero, B. Mascialino, P. Moretto, P. Nieminen, A. Rosenfeld, C. Villagrasa and C. Zacharatou, Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178

[2] Geant4 Monte Carlo simulation of absorbed dose and radiolysis yields enhancement from a gold nanoparticle under MeV proton irradiation, H. N. Tran, M. Karamitros, V. Ivantchenko, S. Guatelli, S. McKinnon, K. Murakami, T. Sasaki, S. Okada, M.C. Bordage, Z. Francis, Z. EL Bitar, M. A. Bernal, J. I. Shin, S. B. Lee, Ph. Barberet, T.T. Tran, J. M. C. Brown, S. Incerti, Nucl. Instrum. Meth. B 373 (2016) 126-139

[3] GPU Acceleration of Monte Carlo Simulation at the Cellular and DNA Levels, S. Okada, K. Murakami, K. Amako, T. Sasaki, S. Incerti, M. Karamitros, N. Henderson, M. Gerritsen, M. Asai, A. Dotti, Smart Innovation, Systems and Technologies 45 (2016) 323-332

[4] Track structure modeling in liquid water: A review of the Geant4-DNA very low energy extension of the Geant4 Monte Carlo simulation toolkit, M. A. Bernal, M. C. Bordage, J. M. C. Brown, M. Davídková, E. Delage, Z. El Bitar, S. A. Enger, Z. Francis, S. Guatelli, V. N. Ivanchenko, M. Karamitros, I. Kyriakou, L. Maigne, S. Meylan, K. Murakami, S. Okada, H. Payno, Y. Perrot, I. Petrovic, Q.T. Pham, A. Ristic-Fira, T. Sasaki, V. Štěpán, H. N. Tran, C. Villagrasa, S. Incerti, Phys. Med. 31 (2015) 861-874

  Website :
http://geant4-dna.org

Revision 42015-09-29 - Main.GenevieveGilbert

Line: 1 to 1
 
META TOPICPARENT name="FJPPLprojects"
APP_01 : The Geant4-DNA project at the Physics-Biology frontier
Line: 23 to 23
 
APP_02 : Study of biomolecular ion stability in gas-phase by two complementary approaches : a cryogenic storage ring and a device for molecular cluster irradiation
Changed:
<
<		Summary :
>
>		Summary :
The IPNL-RIKEN/TMU project aims to investigate by two complementary technics the fragmentation and the lifetime of excited states of biologically relevant molecules. The experimental method developed at RIKEN (Japan) uses the RICE-ring, Riken Cryogenic Electrostatic ring, and that developed at the IPNL (Lyon) uses the DIAM, Device for molecular cluster irradiation. The experiments undertaken in both laboratories will provide complementary information and a better understanding of the physical chemistry of biomolecular ions such as nucleobases or proteins.
  French members :
M. Farizon, H. Abdoul-Carime, B. Farizon, L. Feketeova
Line: 31 to 32
 Japanese members :
T. Azuma, T. Furukawa, S. Kuma, J. Matsumoto, Y. Nakano, H. Shiromaru, H. Tanuma
Changed:
<
<		References :
>
>		References :
[1] Y. Nakano, W. Morimoto, T. Majima, J. Matsumoto, H. Tanuma, H. Shiromaru, and T. Azuma. A cryogenic electrostatic storage ring project at Riken. Journal of Physics:Conference Series 388:142027, 2012
[2] G. Bruny, S. Eden, S. Feil, R. Fillol, K. El Farkh, M. Harb, C. Teyssier, Ouaskit S., Abdoul-Carime H., B. Farizon B., M. Farizon, T.D. Märk. A new experimental setup designed for the investigation of irradiation of nanosystems in the gas phase: A high intensity mass and energy selected cluster beam. Review of Scientific Instruments, 83:013305, 2012
  Website :
Added:
>
>		http://www.riken.jp/en/research/labs/chief/atom_mol_opt_phys/
https://www.ipnl.in2p3.fr/spip.php?rubrique62
 
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Revision 32015-07-15 - Main.PhilipBambade

Line: 1 to 1
 
META TOPICPARENT name="FJPPLprojects"
APP_01 : The Geant4-DNA project at the Physics-Biology frontier
Changed:
<
<		Summary :
>
>		Summary :
 The Bio2 projects encompasses modeling and experimental interdisciplinary activities. Both Japan and French teams are involved in the Geant4-DNA project aiming at extending the Geant4 Monte Carlo toolkit for the modeling of early biological effects of ionising radiation at the DNA scale. In 2014, the physics models of Geant4-DNA have all been deployed to GPGPU allowing to reach impressive performance (> 200 speed gain). Two papers have been submitted for publication. In 2015, the porting of new physics models for the simulation of electrons in liquid water is on-going. In the near future, we expect to start the porting of Geant4-DNA physicochemical and chemical processes to GPGPU.

French members :

Changed:
<
<		S. Incerti,
>
>		S. Incerti
  Japanese members :
T. Sasaki, K. Amako, Y. Hirano, A. Kimura, K. Murakami, S. Okado, C. Omachi, T. Toshito
Changed:
<
<		References :

- THE GEANT4-DNA PROJECT, S. Incerti et al., Int. J. Model. Simul. Sci. Comput. 1 (2010) 157

- ACCELERATION OF GEANT4-DNA PHYSICS MODELS
PERFORMANCE USING GRAPHICS PROCESSING UNIT, S. Okada et al., Joint International Conference on Supercomputing in Nuclear Applications + Monte Carlo (SNA+MC2015), Nashville, TN, USA, April 19-23, 2015, submitted

- GPU ACCELERATION OF MONTE CARLO SIMULATION AT THE CELLULAR AND DNA LEVELS, S. Okada et al., InMed2015 (Innovation in Medicine and Healthcare 2015), Kyoto, Japan,September 11-12, 2015, submitted

>
>		References :
[1] THE GEANT4-DNA PROJECT, S. Incerti et al., Int. J. Model. Simul. Sci. Comput. 1 (2010) 157
[2] ACCELERATION OF GEANT4-DNA PHYSICS MODELS
PERFORMANCE USING GRAPHICS PROCESSING UNIT, S. Okada et al., Joint International Conference on Supercomputing in Nuclear Applications + Monte Carlo (SNA+MC2015), Nashville, TN, USA, April 19-23, 2015, submitted
[3] GPU ACCELERATION OF MONTE CARLO SIMULATION AT THE CELLULAR AND DNA LEVELS, S. Okada et al., InMed2015 (Innovation in Medicine and Healthcare 2015), Kyoto, Japan,September 11-12, 2015, submitted
 
Changed:
<
<		website :
>
>		Website :
 http://geant4-dna.org

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Line: 36 to 33
  References :
Changed:
<
<		website :
>
>		Website :
 
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Revision 22015-07-13 - Main.SebastienIncerti

Line: 1 to 1
 
META TOPICPARENT name="FJPPLprojects"
APP_01 : The Geant4-DNA project at the Physics-Biology frontier

Summary :

Changed:
<
<		The Bio2 projects encompasses modeling and experimental interdisciplinary activities. Both Japan and French teams are involved in the Geant4-DNA project aiming at extending the Geant4 Monte Carlo toolkit for the modeling of early biological effects of ionising radiation at the DNA scale. In particular, we expect to port Geant4-DNA physics to GPU allowing to achieve impressive computing time gains. In parallel, we propose to carry out a prospective radioactive study of Japanese teas (in particular detection of 137Cs), collecting samples from sites of production. All the detection efficiencies are measured experimentally and controlled using the Geant4 code.
>
>		The Bio2 projects encompasses modeling and experimental interdisciplinary activities. Both Japan and French teams are involved in the Geant4-DNA project aiming at extending the Geant4 Monte Carlo toolkit for the modeling of early biological effects of ionising radiation at the DNA scale. In 2014, the physics models of Geant4-DNA have all been deployed to GPGPU allowing to reach impressive performance (> 200 speed gain). Two papers have been submitted for publication. In 2015, the porting of new physics models for the simulation of electrons in liquid water is on-going. In the near future, we expect to start the porting of Geant4-DNA physicochemical and chemical processes to GPGPU.
  French members :
S. Incerti,
Line: 13 to 13
  References :
Changed:
<
<		- The Geant4-DNA project, S. Incerti et al., Int. J. Model. Simul. Sci. Comput. 1 (2010) 157
- Evidence of 131I and 134, 137Cs activities in Bordeaux, France due to the Fukushima nuclear accident, F. Perrot et al., Journal of Environmental Radioactivity 114 (2012) 61
>
>		- THE GEANT4-DNA PROJECT, S. Incerti et al., Int. J. Model. Simul. Sci. Comput. 1 (2010) 157

- ACCELERATION OF GEANT4-DNA PHYSICS MODELS
PERFORMANCE USING GRAPHICS PROCESSING UNIT, S. Okada et al., Joint International Conference on Supercomputing in Nuclear Applications + Monte Carlo (SNA+MC2015), Nashville, TN, USA, April 19-23, 2015, submitted

- GPU ACCELERATION OF MONTE CARLO SIMULATION AT THE CELLULAR AND DNA LEVELS, S. Okada et al., InMed2015 (Innovation in Medicine and Healthcare 2015), Kyoto, Japan,September 11-12, 2015, submitted

  website :
http://geant4-dna.org
Deleted:
<
<		http://www.cenbg.in2p3.fr/-PRISNA-platform-?lang=en
 
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Revision 12015-06-23 - Main.GenevieveGilbert

Line: 1 to 1
Added:
>
>
META TOPICPARENT name="FJPPLprojects"
APP_01 : The Geant4-DNA project at the Physics-Biology frontier

Summary : The Bio2 projects encompasses modeling and experimental interdisciplinary activities. Both Japan and French teams are involved in the Geant4-DNA project aiming at extending the Geant4 Monte Carlo toolkit for the modeling of early biological effects of ionising radiation at the DNA scale. In particular, we expect to port Geant4-DNA physics to GPU allowing to achieve impressive computing time gains. In parallel, we propose to carry out a prospective radioactive study of Japanese teas (in particular detection of 137Cs), collecting samples from sites of production. All the detection efficiencies are measured experimentally and controlled using the Geant4 code.

French members :
S. Incerti,

Japanese members :
T. Sasaki, K. Amako, Y. Hirano, A. Kimura, K. Murakami, S. Okado, C. Omachi, T. Toshito

References :

- The Geant4-DNA project, S. Incerti et al., Int. J. Model. Simul. Sci. Comput. 1 (2010) 157
- Evidence of 131I and 134, 137Cs activities in Bordeaux, France due to the Fukushima nuclear accident, F. Perrot et al., Journal of Environmental Radioactivity 114 (2012) 61

website :
http://geant4-dna.org
http://www.cenbg.in2p3.fr/-PRISNA-platform-?lang=en

------------------------------

APP_02 : Study of biomolecular ion stability in gas-phase by two complementary approaches : a cryogenic storage ring and a device for molecular cluster irradiation

Summary :

French members :
M. Farizon, H. Abdoul-Carime, B. Farizon, L. Feketeova

Japanese members :
T. Azuma, T. Furukawa, S. Kuma, J. Matsumoto, Y. Nakano, H. Shiromaru, H. Tanuma

References :

website :

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